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• same() : GroundClause , GroundPredicate , Clause , Predicate , Term , Variable , Function
• sameTruthValueAndSense() : Database
• SAT() : SAT
• saveAllCounts() : Inference
• saveCnts() : Inference
• saveCurrentAsLastAssignment() : HVariableState
• saveLastAsCurrentAssignment() : HVariableState
• saveLowState() : HVariableState , VariableState
• saveLowStateAll() : HVariableState
• saveLowStateCont() : HVariableState
• saveLowStateToChain() : MCMC
• saveLowStateToDB() : HVariableState , VariableState
• saveLowStateToGndPreds() : HVariableState , VariableState
• saveLowToCurrentAll() : HVariableState
• saveLowToCurrentCont() : HVariableState
• saveLowToCurrentDis() : HVariableState
• scaleSamples() : MCMC , Inference
• sendAuxMessage() : Node
• sendMessage() : Node , Factor
• Set() : Complex
• setActive() : VariableState
• setActiveStatus() : Database
• setAsEvidence() : VariableState
• setAsQuery() : VariableState
• setAuxClauseData() : Clause
• setBreakHardClauses() : VariableState
• setClauseInfoPriorMeansToClauseWts() : MLN
• setClauses() : MLN
• setClauseSampler() : Clause
• setClauseWts() : MLN
• setClosedWorld() : Database
• setConstantsByType() : Domain
• SetConstantValue() : PolyNomial
• setConstDualMap() : Domain
• SetContSampleFile() : HMCSAT
• setContVarValueFromEvi() : HVariableState
• setCount() : Feature
• setDB() : Domain
• setDeactivatedStatus() : Database
• setDelta() : ClauseSampler
• setDirty() : Clause
• setDisVarValueFromEvi() : HVariableState
• setEmptyFuncBinaryTemplate() : Domain
• setEmptyFuncUnaryTemplate() : Domain
• setEmptyPredTemplate() : Domain
• setEpsilon() : ClauseSampler
• setEqClassId() : Variable
• setEqualPredTemplate() : Domain
• setEvidenceStatus() : Database
• setExternalClause() : MLN
• setFormulaAndClausesArray() : MLN
• setFormulaIsExistUnique() : MLN
• setFormulaIsHard() : MLN
• setFormulaNumPreds() : MLN
• setFormulaPriorMean() : MLN
• setFormulaWt() : MLN
• setFtol() : LBFGSR , LBFGSB , LBFGSP
• setFuncSet() : Domain
• setFunction() : Term
• setGndClausesWtsToSumOfParentWts() : HVariableState , VariableState
• setGroundPredicateIndex() : GroundClause
• setGroundPredicateSense() : GroundClause
• setHeuristic() : HMaxWalkSat , MaxWalkSat
• setHState() : Inference
• setId() : PredicateTemplate , Term , Feature
• setIndexTranslator() : PseudoLogLikelihood
• setInference() : OnlineEngine
• setInferenceMode() : VariableState , HVariableState
• setInitFromEvi() : HVariableState
• setIsHardClause() : Clause
• setItem() : MultDArray< Type >
• setLazy() : HVariableState , VariableState
• setLazyFlag() : Database
• setLogOddsWeights() : DiscriminativeLearner
• setLowerBounds() : LBFGSP , LBFGSB
• setMaxInferenceSteps() : OnlineEngine
• setMaxIter() : LBFGSB , LBFGSR , LBFGSP
• setMaxSamples() : ClauseSampler
• SetMaxSeconds() : HMaxWalkSat
• setMaxSteps() : MaxWalkSat
• setMCMCParameters() : MCMC
• setMeansStdDevs() : PseudoLogLikelihood , DiscriminativeLearner
• setMinSamples() : ClauseSampler
• setMLNClauseInfos() : MLN
• setMLNWeights() : DiscriminativeLearner
• setName() : PredicateTemplate , Feature
• SetNoisePra() : HMaxWalkSat
• setNumFalseNonEvidGndings() : Domain
• setNumFalseNonEvidGndingsPerClause() : Domain
• setNumSolutions() : SAT
• setNumTrueNonEvidGndings() : Domain
• setNumTrueNonEvidGndingsPerClause() : Domain
• setNumValues() : MeanVariance
• setOthersInBlockToFalse() : HVariableState , VariableState , MCMC
• setParent() : Predicate , Term , Function
• setPerformingInference() : Database
• setPredicateAndUpdate() : GroundRRF
• setPredicateAndUpdateCounts() : GroundRRF
• setPredicateValue() : GroundRRF
• setPredIdToClausesMap() : MLN
• setPrintInfo() : MaxWalkSat
• SetPrintVarsPerSample() : HMCSAT
• setPriorMeans() : IndexTranslator
• setProbTrue() : MCMC
• setProposalStdev() : HVariableState
• setRelevantClausesFormulas() : IndexTranslator
• setRepresentative() : Variable
• setRetConstId() : Function
• SetSAInterval() : HMaxWalkSat
• setSampleGndPreds() : PseudoLogLikelihood
• setSATempDownRatio() : HMaxWalkSat
• setSatisfiedClause() : VariableState
• setSeed() : Inference
• setSense() : Predicate
• setState() : Inference
• setStrIfStr() : ListObj
• setStrToFuncTemplateMapAndFuncDualMap() : Domain
• setStrToPredTemplateMapAndPredDualMap() : Domain
• setTargetCost() : SAT
• setTemplate() : Function , Predicate
• setTermToConstant() : Predicate
• setTermType() : Feature
• setTiedVars() : Variable
• setTrueFalseGroundingsStore() : Domain
• setTruePredInBlock() : Domain
• setTruthValue() : GroundPredicate , Predicate
• setTypeDualMap() : Domain
• setupFillerIter() : ParentIter
• setUpperBounds() : LBFGSB , LBFGSP
• setUseThreshold() : HVariableState , VariableState
• setValue() : PredicateGroundFeature , Database
• setValueAndUpdate() : PredicateGroundFeature
• setValueAndUpdateCounts() : PredicateGroundFeature
• setValueOfAtom() : VariableState , HVariableState
• setValues() : Permutation< Type >
• setValuesToGivenValues() : Database
• setValuesToUnknown() : Database
• SetVarName() : PolyNomial
• SetVarValue() : PolyNomial
• setWatch1() : VariableState , HVariableState
• setWatch2() : HVariableState , VariableState
• setWeight() : Feature , ClausalFeature , RecursiveFeature , RRF
• setWeightsFromExample() : ClausalFeature
• setWt() : GroundClause , Clause
• setWtToHardWt() : GroundClause
• setWtToSumOfParentWts() : GroundClause
• setWtWhenFalse() : GroundPredicate
• setWtWhenTrue() : GroundPredicate
• shrinkToSize() : Array< Type >
• shuffle() : Array< Type > , HashArray< Type, HashFn, EqualFn >
• simplifyClauseFromFixedAtoms() : HVariableState , VariableState
• SimulatedTempering() : SimulatedTempering
• size() : Array< Type > , HashArray< Type, HashFn, EqualFn > , ListObj , HashList< Type, HashFn, EqualFn > , Permutation< Type >
• sizeKB() : MRF , GroundPredicate
• sizeMB() : AuxClauseData , Clause , Term , Predicate
• solveConstraint() : LogSigMoid
• SolveConstraintAndRandomSample() : HVariableState
• SolveContByLBFGS() : HVariableState
• SolveHybridConstraintToContVarSample() : HVariableState
• sortByLen() : Clause
• Sqrt() : Complex
• startLBFGS() : LBFGSP
• startPl() : LBFGSB
• StrFifoList() : StrFifoList
• stringToInt() : Internals
• StrInt() : StrInt
• StructLearn() : StructLearn
• substr() : Util , Internals
• subtractBreakCost() : HVariableState , VariableState
• subtractBreakCostFromAtomsInClause() : HVariableState , VariableState
• subtractMakeCost() : VariableState , HVariableState
• subtractMakeCostFromAtomsInClause() : HVariableState , VariableState
• succ() : Internals
• SuperClause() : SuperClause
• SuperPred() : SuperPred

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